PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004493763.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family LBD
Protein Properties Length: 219aa    MW: 24439.4 Da    PI: 7.6951
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004493763.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.1e-40111121101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p +er +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l
  XP_004493763.1  11 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQL 105
                     7*************************99******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_004493763.1 106 MQVKSQL 112
                     *999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.28210112IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3811109IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MANSTSGSGS PCGACKFLRR KCASDCIFAP YFCSEQGPAR FAAIHKVFGA SNVSKLLLHI  60
PAHERCEAVV TIAYEAQARI RDPVYGCVSH IFALQQQVAC LQAQLMQVKS QLSQNMNTEN  120
NQWTGNNNNN NNIGGTQPMN YPFYNMNPIS PQSSLESSID HSSSSMNDGM MNMQDVQSSR  180
DDFSFQPCNN NNSKKRMSYN NNYEHLGELQ ELALRMMRN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1423641e-166BT142364.1 Medicago truncatula clone JCVI-FLMt-14N17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493763.11e-164PREDICTED: LOB domain-containing protein 16 isoform X1
SwissprotQ9SLB72e-78LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A072U4551e-119A0A072U455_MEDTR; LOB domain protein
STRINGGLYMA19G34590.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45093358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-59lateral organ boundaries-domain 16